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Escherichia coli pathotypes associated with diarrhea in human and domestic
animals
Article in American Journal of Animal and Veterinary Sciences · September 2014
DOI: 10.3844/ajavssp.2014.155.161
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American Journal of Animal and Veterinary Sciences 9 (3): 155-161, 2014
ISSN: 1557-4555
© 2014 I.I. Shabana, This open access article is distributed under a Creative Commons Attribution
(CC-BY) 3.0 license
doi:10.3844/ajavssp.2014.155.161 Published Online 9 (3) 2014 (http://www.thescipub.com/ajavs.toc)
155Science Publications AJAVS
ESCHERICHIA COLI PATHOTYPES ASSOCIATED WITH
DIARRHEA IN HUMAN AND DOMESTIC ANIMALS
Shabana, I.I.
Department of Bacteriology, Faculty of Veterinary Medicine,
Immunology and Mycology, Suez Canal University, Egypt
Received 2014-06-14; Revised 2014-07-27; Accepted 2014-08-08
ABSTRACT
Ruminants are important reservoirs for zoonotic pathogenic E. coli. The objective of this study was to
characterize pathogenic E. coli isolates from cattle and sheep linked to human illness with respect to their path
types, serotypes and genotypes. E. coli O157:H7 isolated from cattle, sheep and human patients were
compared for their genomic similarity by Pulsed-Field Gel-Electrophoresis (PFGE). PCR detection of
virulence factors associated with different E. coli path types (VTEC, ETEC, EPEC, EAEC and EIEC) revealed
that VTEC was the most prevalent path type (22/45; 48.9%), followed by EAEC (3/45; 6.7%), EPEC (1/45;
2.2%), a EPEC (3/45; 6.7%), ETEC (1/45; 2.2%) and EIEC (1/45; 2.2%). E. coli O157:H7 represented the
most prevalent VTEC serotypes (11/22; 50%). Pulsed field gel electrophoresis typing revealed exact matches
between E. coli O157:H7 isolates from the human patients, sheep and cattle in the same municipality. VTEC
play an important cause of diarrhea in human, sheep and cattle. The molecular relatedness between PFGE
profiles of E. coli O157:H7 isolates from human, sheep and cattle supported the hypothesis that ruminants
especially cattle and sheep act as reservoirs of E. coli O157:H7 for human infection.
Keywords: DEC, Human, Ruminants, O157, PFGE
1. INTRODUCTION
Diarrheal diseases are a leading cause of morbidity and
mortality in developing countries. Escherichia coli is
recognized as an important cause of both sporadic cases and
outbreaks of diarrhea all over the world. Nguyen et al.
(2005). Diarrheagenic Escherichia Coli (DEC) strains can
be classified into five major categories on the basis of the
nature of their infection and pathogenic mechanisms:
They are Enter Pathogenic E. Coli (EPEC), Enter
Hemorrhagic E. Coli (EHEC), Enterotoxigenic E. Coli
(ETEC), enter invasive E. Coli (EIEC) and Enter
Aggregative E. Coli (EAEC) (Tamaki et al., 2005).
O157:H7 and related non-O157 VTEC strains are
pathogens of public health concern worldwide. They
may cause severe outbreaks of gastrointestinal illness
with clinical symptoms ranging from diarrhea and
hemorrhagic colitis to the life-threatening Hemolytic
Uraemic Syndrome (HUS) (Lynn et al., 2005). VTEC
strains have been isolated from a variety of animals and
cattle are considered to be the major reservoir for VTEC
strains (Ferens and Hovde, 2011). However, recent
evidence has indicated that small domestic ruminants,
including sheep and goats, are also key reservoirs of
VTEC (La Ragione et al., 2009). In particular, sheep and
their products have been documented as reservoirs for
VTECs that belong to a diverse set of non-O157
Serogroup that harbor genes encoding key virulence
factors that have been implicated in human disease
(Djordjevic et al., 2001). Transmission of VTEC to
humans occurs through direct or indirect contact with
animals or their environment, consumption of
contaminated food or water and through person-to-
person contact (Gillespie et al., 2005).
In order to prevent and control DEC epidemics, a
reliable procedure should be followed to identify and
categorize DEC isolates. Since several virulence factors
have been identified in DEC strains, modern molecular
detection methods, including PCR have been developed
(Teng et al., 2004). They are performed at the genetic
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Shabana, I.I. / American Journal of Animal and Veterinary Sciences 9 (3): 155-161, 2014
156Science Publications AJAVS
level and directly detect genes for specific virulence
factors, which themselves determine the pathogenicity.
The presence of these genes is the evidence that renders
the virulence and that can be used to categorize DEC
strains (Yang et al., 2007).
This study aimed to document the association of
pathogenic Escherichia coli isolates with diarrhea in
human and animals, based on the PCR-based
identification of their intrinsic virulence. And try to find
the genetic relatedness among VTEC strains from human,
cattle and sheep to identify the zoonotic possibility.
2. MATERIALS AND METHODS
2.1. Bacterial Strains
Stool samples were collected from patients with
diarrhea and rectal swabs were collected from cow and
sheep with diarrhea. Typical E. coli isolates selected
were selected from Eosin Methylene Blue (EMB) agar,
which discourage the growth of gram positive bacteria and
give a distinctive metallic green sheen, these isolates
were then subjected to the IMViC test for the further
selection of E. coli strains.
2.2. Reference Strains
E. coli strains used as positive controls were: 241
(LT), 422 (aggR), 418 (bfp) 226 (ST), S103 (E-hly),
G200 (ipaH), 206 (EAST1), ED33 (V1, V2 and eae) and
E. coli A300 was used as a negative control. Reference
strains were kindly provided by the Niigata Prefectural
Institute of Public Health and Environmental Sciences,
Department of Bacteriology, Niigata, Japan.
2.3. Somatic and Flagella Serotyping
Isolates were grown on nutrient agar plates at 37 8C
overnight, then the cells were collected and suspended in
0.9% sterile normal saline (154 mEq/L sodium and 154
mEq/L chloride, pH adjusted to 7) and autoclaved at 121
8C for 15 min and then the cells were collected by
centrifugation and resuspended in an appropriate volume
of sterile normal saline. Detection of O-serogroup was
performed using a commercially available O-
serogrouping Kit (Denka Seiken, Tokyo, Japan)
(Takahashi et al., 2008). The Flagellar phase inversion
was carried out using the standard Craigie tube technique
by passage through semi-solid agar containing the
appropriate flagellar antis era (Davies and Wray, 1997).
• O-antis era used were,
• Polyvalent I: O1, O26, O86a, O111, O119, O127a,
O128
• Polyvalent 2: O44, O55, O125, O126, O146, O166
• Polyvalent 3: O18, O114, O142, O151, O157, O158
• Polyvalent 4: O6, O27, O78, O148, O159, O168
• Polyvalent 5: O20, O25, O63, O153, O167
• Polyvalent 6: O8, O15, O115, O169
• Polyvalent 7: O28ac, O112ac, O124, O136, O144
• Polyvalent 8: O29, O143, O152, O164
• Polyvalent 9: O74, O91, O103, O121, O145,
O161, O165
• Flagellar antis era (H-antis era) used were, H2, H4, H5
• H6, H7, H9, H10, H11, H12, H16, H18, H19, H20,
H21, H27,H28, H34, H40, H41, H42, H45, H51
2.4. Template DNA Preparation
Single colonies obtained from nutrient agar were
inoculated into Luria Bertani (LB) broth (Merck) and
were grown at 37°C for 12 h. Cells were harvested from
2 mL of the cell suspension by centrifuging at 16 000×g
for10 min and discarding the supernatant. Genomic DNA
was then isolated by boiling method (Usein et al., 2009).
2.5. Detection of Virulence Factors
Detection of virulence factors was performed by
PCR. Primer sequences and PCR conditions used for the
study listed in Table 1, (Moyo et al., 2007; Ochoa et al.,
2008; Vu-Khac et al., 2007; Mendez-Arancibia et al.,
2008: Zweifel et al., 2006; Osek, 2003; Shabana et al.,
2013). PCR performed in the Takara thermal cycler
(Takara, Tokyo, Japan). PCR products were separated and
visualized by gel electrophoresis in 1.5% agarose
(Wako, Japan) in Tris-Acetate-EDTA (TAE) buffer at
100 V. And a 100 or 500 bp DNA ladder (one-step
ladder, Wako) was included in each agarose run,
accordingly the amplified product.
2.6. Pulsed Field Gel Electrophoresis (PFGE)
PFGE was performed according to CDC (the Pulse
Net protocol of the (CDCP, 1998). The agarose-
embedded bacterial genomic DNA was digested with
restriction enzyme XbaI at 37 8C for 4 h.
Electrophoresis was performed on 1% agarose gel
with 0.5-Tris-borate-EDTA buffer. The
electrophoretic conditions were optimized for the
separation of the 24-to 600-kB XbaI-digested macro
restriction fragments. The following PFGE parameters
were applied: Voltage of 6 v/cm, initial switch time of
2.2 s, final switch time of 54.2 s and run time of 19 h.
Electrophoresis was conducted by using a CHEF-DRII
(Bio-Rad Laboratories, Tokyo, Japan). The gel was
stained with ethidium bromide and imaged with the
Gel Doc 2000 and Multi-Analyst program (Bio-Rad).
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Shabana, I.I. / American Journal of Animal and Veterinary Sciences 9 (3): 155-161, 2014
157Science Publications AJAVS
Table 1. PCR primers and conditions for amplification of virulence genes
Primer PCR PCR
Target gene designation Primer sequence(5'-3') conditions * product (bp) Reference
Vero toxin KS7 CCCGGATCCATGAAAAAAACATTATTAATAGC 95°C,30 s; 285 Zweifel et al.
1 (V1) KS8 CCCGAATTCAGCTATTCTGAGTCAACG 52°C,30 s; (2006)
72°C,30 s
Vero toxin VT2e AATACATTATGGGAAAGTAATA 95°C,30 s; 348 Zweifel et al.
2 (V2) VT2f TAAACTGCACTTCAGCAAAT 52°C,30 s; (2006)
72°C,30 s
eae (all intimin SK1 CCCGAATTCGGCACAAGCATAAGC 95°C,30 s; 863 Zweifel et al.
genes) SK2 CCCGGATCCGTCTCGCCAGTATTCG 61°C,30 s; (2006)
72°C,30 s
E-hly (EHEC- HlyA1 GGTGCAGCAGAAAAAGTTGTAG 95°C,30 s; 1550 Zweifel et al.
hemolysin) HlyA4 TCTCGCCTGATAGTGTTTGGTA 61°C,30 s; (2006)
72°C,30 s
(LT) Heat-labile elt1 ATTTACGGCGTTACTATCCTC 95°C,30 s; 281 Vu-Khac et al.
Enterotoxin elt2 TTTTGGTCTCGGTCAGATATG 58°C,30 (2007)
72°C,30 s
(St)Heat-stable St5 TTAATAGCACCCGGTACAAGCAGG 95°C,30 s; 147 Mendez-
Enterotoxin St3 CTTGACTCTTCAAAAGAGAAAATTAC 52°C,30 s; Arancibia et al.
72°C,30 s (2008)
(EAST1) Eagg AstA1-1 CCATCAACACAGTATATC 95°C,30 s; 111 Osek (2003)
EaggEC heat AstA1-2 GGTCGCGAGTGACGGCTTTGT 52°C,30 s;
-stable enterotoxin 72°C,30 s
(aggR) Fimbrial aggR1 CTAATTGTACAATCGATGTA 95°C,30 s; 457 Moyo et al.
antigen-specific aggR2 AGAGTCCATCTCTTTGATAAG 55°C,30 s (2007)
gene 72°C,30 s;
(bfp) bundle- EP1 AATGGTGCTTGCGCTTGCTGC 95°C,30 s; 326 Ochoa et al.
forming pilus EP2 GCCGCTTTATCCAACCTGGTA 52°C,30 s; (2008)
(ipaH)Invasion EI-1 GCTGGAAAAACTCAGTGCCT 95°C,30 s; 424 Shabana et al.
plasmid antigen EI-2 CCAGTCCGTAAATTCATTCT 52°C,30 s; (2013)
72°C,30 s
Dendrograms were created with a Molecular Analyst
(Bio-Rad) by using the Dice coefficient, Un weighted
Pair Group Method with Arithmetic means (UPGMA)
and a position tolerance of 1.3%.
3. RESULTS
3.1. Isolation and Confirmation of E. Coli
Isolates from Diarrheic Cases
A total of 45 presumptive E. coli isolates were
obtained from diarrheic human (n = 29), cow (n = 9) and
sheep (n = 7). The presumptive E. coli isolates were
confirmed as E. coli as they were UidA-positive by PCR,
UidA-F, CCAAAAGCCAGACAGAGT, UidA-R
GCACAGCACATCAA AGAG (Moyo et al., 2007).
3.2. Serotyping
O antigen and H antigen typing using conventional
method revealed a variety of sertypes, 22 E. coli isolates
correlated with VTEC (O157:H7, O157:H11, O26:H11,
O121: HNM, O165: HUT), there was only one ETEC
isolate (O8:H12), three EAEC belonging to (OUT: H16,
OUT: H28, OUT: HNM), EPEC represented by only one
serotype (O115:HUT), three serotypes were aEPEC
(OUT:H21, OUT:HNM, O128:H2), 1 EIEC belonging to
serotype O74:H9. Fourteen serotypes were negative for
the tested virulence genes belonging to serotypes (O166:
HUT, O18: HUT, OUT: HUT, OUT: H27, O1: HUT,
O153: HUT, O8: HUT, OUT: H21, OUT: H4 (Table 2).
3.3. Virulence Genes Detection and
Categorization of DEC:
From the total of 45 isolates, 31 isolates were positive
for at least one of the targeted virulence genes. The
minimal criteria for the determination of DEC were as
follows: The presence of V1 and/or V2 for VTEC, the
presence of LT and /or ST for ETEC, the presence of
aggR and or astA for EAEC, the presence of bfpA and
eae for typical EPEC and the presence of eae only for
atypical EPEC, the presence of ipaH for EIEC. Based on
these criteria, the 31 isolates were classified as VTEC
(22 isolates) expressed either V1 or V2 or both, ETEC (1
isolate) from calf, two isolates were EAEC positive for
aggR and astA and one isolate EAEC (astA) was
heterogenous among the putative DEC, typical EPEC
represented by only one strain, 3 a EPEC isolates and 1
isolate EIEC, respectively (Table 2).

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Table 2. Genotypic profile of diarrhegenic Escherichia coli
DEC Genotype Serogroup (no. of isolates) Host
VTEC VT1, eaeA O26:H11(5) Human
O157:H7(1) sheep
VT2, eaeA O157:H7(1), O121:HNM (1), O165:HUT (1) Human
O157:H7(1) sheep
VT1,VT2, Ehly, eaeA O157:H7(4) Human
O157:H7(2), O8:H4(2) sheep
O157:H11(2)), O157:H7( 2) cow
ETEC LT, ST, astA O8:H12(1) cow
EAEC aggR, astA OUT:H16(1) Human
astA OUT:H28(1), OUT:HNM(1) Human
EPEC eaeA, bfpA O115:HUT(1) Human
aEPEC eaeA OUT:H21(1), OUT:HNM(1), O128:H2(1) Human
EIEC ipaH, astA O74:H9(1) cow
Untypable O166:HUT(2), O18:HUT(3), OUT:HUT(2), Human
O8:HUT(1), OUT:H21(2) cow
OUT:H4(1) Sheep
Fig. 1. Dendogram of PFGE patterns calculated with Dice coefficient for E. coli O157:H7 strains from different hosts. The Pulsed-
field Gel Electrophoresis (PFGE) types (PFTs) were defined by 80% similarity. Isolates with PFGE patterns with similarity
greater than 95% were considered to belong to the same PFT patterns
3.4. PFGE
A PFGE analysis was conducted to identify the genetic
relatedness in the recovered O157 isolates from the
diarrheic human (n = 6), calf (n = 3) and sheep (n = 2), Fig.
1. the strains had more than 80% similarity in the PFGE
pattern, the results indicated five PFTs, A: (n = 1) and B: (n
= 1), C (n = 1), D (n = 7) and E (n = 1); briefly
pulsotype A represented by single human strain
expressing V2, pulsotype B represented by single calf
strain expressing V1 and pulsotype C represented by
single human strain expressing V2. Strains with the
pulsotype D were recovered from the three types of
feces and all shared expression of both V1 and V2,
Pulsotype E also represented by single isolate from
sheep expressing both V1 and V2.
4. DISCUSSION
The reference diagnostic approach in the present
study was The PCR-based detection of specific genes
that render virulence to E. coli. In addition, the
traditional method of Serotyping, which still occupies a
central place in the history of E. coli. Specific E. coli
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159Science Publications AJAVS
Serogroup can be associated reproducibly with certain
clinical syndromes, the serotypes and Serogroup serve as
readily identifiable chromosomal markers that correlate
with specific virulent clones (Whittam et al., 1993).
Almost half of the isolates carried virulence genes
common to Verotoxin-producing Escherichia Coli
(VTEC), which appeared to be the most prevalent DEC
category in this study (48.9%), VTEC distributed among
human, calf and sheep isolates and assigned to serotypes
O157:H7, O26:H11, O121: HNM, O165: HUT and
O8:H4 harbored either V1 or V2 or both in addition to
Ehly and eaeA. This is in concordance with other
report highlighting the involvement of VTEC in
human, calf and sheep illness (Blanco et al., 2003).
EPEC represented by four strains restricted to human
isolates; three were atypical EPEC possessed only the
virulence marker eae, indicative for the presence of the
Locus of Enterocyte Effacement (LEE) pathogenicity
island and single typical EPEC strain possessed an
inducible bundle-forming pilus (bfpA) associated with
the presence of the EPEC Adherence Factor (EAF)
plasmid and Localized Adherence (LA) on HEp-2 cells
in addition to LEE-encoded virulence factors. These
findings agreed with previous report about the prevalence
of EPEC and how atypical EPEC had more implication
than typical EPEC (Afset et al., 2003). The majority of
EPEC isolates belong to classic serotypes derived from 12
classical O serogroups (O26, O55, O86, O111, O114,
O119, O125, O126, O127, O128, O142 andO158)
(Scaletsky et al., 2010). This study reported O115: HUT
as EPEC which agreed with (Saito et al., 2005).
ETEC was detected in only one strain from cow
assigned for serotype O8:H12, the classical serotype
of ETEC (Huasai et al., 2012). It possessed heat-
labile, heat-stable enterotoxins and plasmid-borne
astA gene encoding the EAST1. Although the lack of
references, which monitors the presence of
Enteroinvasive Escherichia coli (EIEC) in cow, the
current study recorded one strain assigned for O74:H9 and
possessed Invasion plasmid antigens (Ipa) proteins
which encoded in the ipa operon.
Theoretical digestion of sequenced genomes of E.
coli O157 strains should generate 41 fragments with
XbaI. Some smaller bands run off the gel, while others
are too similar in size and co migrate. As a
consequence only half to three quarters of these bands
can usually be distinguished by PFGE analysis.
(Kudva et al., 2002) demonstrated that PFGE diversity
in E. coli O157 is primarily attributed to insertions and
deletions, not to point mutations. PFGE was used to
genetically discriminate VTEC O157:H7 isolates from
different hosts, similar patterns were found among
calf, sheep and human strains in Lineage D, which
accounted for 63.3% of the tested strains. The strains
had expressed the same virulence genes, both V1 and
V2, in addition to Ehly and eaeA, while other lineages
were distinctly different due to the variation in
expression of virulence genes.
Enterohaemorrhagic Escherichia Coli (EHEC)
O157:H7 is a zoonotic enteric pathogen of worldwide
importance; ruminants cited as its primary reservoirs.
Cattle considered to be the sole source of E. coli
O157:H7 outbreaks in humans; the pathobiology of E.
coli O157:H7 in small domestic ruminants does
appear to differ significantly from that described in
cattle and with cattle considered to be the primary
reservoir (La Ragione et al., 2009).
Transmission of E. coli O157:H7 to humans is
principally via contamination of food by animal feces
(Jaros et al., 2013). Food products of animal origin
have been confirmed as vehicles of disease
transmission in case-control studies of VTEC
outbreaks and sporadic VTEC infections; these
included raw milk (Guh et al., 2010) and undercooked
meat products (Chapman et al., 2001).
World Health Organization (WHO) listed
Escherichia coli spp. as one of the most important
Pathogenic bacteria which transmitted by food especially
Enterotoxigenic E. coli (ETEC), enteropathogenic E.
Coli (EPEC), Enterohaemorrhagic E. Coli (EHEC),
enteroinvasive E. coli (EIEC), however the restricted
number of the strains in the present study; EHEC, ETEC
and EIEC strains were reported in cattle,. The findings
refer to the importance of cattle and sheep as sources for
zoonotic Escherichia coli strains.
5. CONCLUSION
High prevalence of VTEC among diarrheic human,
sheep and cattle and highly similar genotypes of VTEC
O157:H7 are found in both cattle and sheep and cause
human illness suggest that pathogenic strains can circulate
freely between them. This information will be of
importance for future efforts to trace sources of infection
and reduce the burden of disease caused by O157:H7.
6. ACKNOWLEDGEMENT
I’d like to thank Dr. Hiroshi Sato, Niigata Prefectural
Institute of Public Health and Environmental Sciences,
Department Of Bacteriology, Niigata, Japan; for his
valuable help and contributions.
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Shabana, I.I. / American Journal of Animal and Veterinary Sciences 9 (3): 155-161, 2014
160Science Publications AJAVS
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